Genomics Sr Staff Scientist

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Day - 08 Hour (United States of America)
This is a Stanford Health Care job.
A Brief Overview
As a member of the Clinical Laboratory team, the Genomic Senior Staff Scientist will collaborate with a diverse team including laboratory directors, genetic counselors, laboratory technologists, bioinformaticians, and clinicians, who work together to provide clinical genetic and genomic test results.
Within this team, the Genomic Senior Staff Scientist is responsible for variant prioritization and interpretation derived from clinical sequencing data, i.e. evaluating the clinical relevance of genetic variants identified by clinical diagnostic tests using appropriate internal and external guidelines, including relevant evidence obtained from the scientific literature. Additional responsibilities include, but are not limited to, drafting clinical reports, contributing to quality and process improvement or development projects, assisting in the design, development and evaluation of new clinical-grade molecular diagnostic tests, evaluating and implementing evolving variant interpretation standards and workflows, and assisting in onboarding new team members.
Locations
Stanford Health Care
What you will do
Identify clinically significant sequence variants (germline and/or somatic), using established tools and workflows
Collect genetic, clinical, and molecular information from peer-reviewed scientific journals and public data sources
Critically analyze and verify the accuracy of published data and abstract information relevant to individual clinical case analyses
Review patient medical records and abstract information relevant to individual clinical case analyses
Independently classify clinically significant sequence variants (germline and/or somatic)
Summarize results of analyses and effectively communicate results in both written and verbal formats
Meet interpretation turn-around times required in a clinical laboratory setting to provide prompt patient care. Demonstrate efficiency in daily tasks to complete assigned volume within the target turn-around time.
Proactively identify or volunteer to address production pressure points and take on projects to improve workplace productivity
Participate in the development of new clinical-grade genetic tests and/or enhancements of existing assays
Assist in clinical validation of new tests and workflow updates
Assist in the development or integration of new analysis systems, software tools, and workflows for new and existing laboratory tests
Identify and report errors or inconsistencies in analysis tools or online resources
Participate in software system verification and other quality improvement projects. Create verification documentation and SOP documentation drafts. Provide suggestions and feedback for SOP improvements of existing tests
Lead the implementation of productivity enhancements
Curate genes for new test development (Mendelian (germline) and/or oncology (somatic)
Contribute to preparations for audits (documentation, quality monitoring, etc.) to meet CAP/CLIA requirements
Create reference or training resource materials
Consistently adhere to C-I-CARE standards in all interactions with team members and external collaborators. Collaborate to resolve misunderstandings and issues early before they impact timelines, team spirit or morale
Education Qualifications
PhD or MS in Molecular Biology, Genetics, or a related discipline/field, from an accredited college or university.
Experience Qualifications
Four (4) or more years of work experience in the field of genetics or cancer genetics, or combination of relevant experiences.
One (1) year or more of work experience in a CLIA-certified clinical laboratory performing diagnostic testing.
Of the above, at least one (1) year experience must be with NGS-based tests and at least one (1) year experience in germline or cancer diagnostic testing.
Required Knowledge, Skills and Abilities
Experience in next generation sequencing and classification/curation of variants
Ability to understand scientific literature and experimental procedures, as well as the limitations and applications of this information in a clinical setting. Experience in critically evaluating genetic data, research publications and online resources
Experience in databases, tools, and resources commonly used in human or model organism genetics and genomics required (e.g. ClinVar/ClinGen, gnomAD, ExAC, HGMD, COSMIC)
Experience working in multidisciplinary team-based projects
Ability to propose/identify and lead the implementation of significant productivity enhancements, particularly changes to decrease turnaround times and/or reduce costs
Change management champion
Detail-orientation with strong analytical skills
Computer skills, including word processing and spreadsheet applications
Strong written and oral English communication skills
Experience with databases, tools, and resources (e.g. ClinVar, gnomAD, ExAC, HGMD, COSMIC ) commonly used in human or model organism genetics and genomics required
Experience in variant interpretation in a clinical genetic testing laboratory required
Experience working both independently and on team-based projects
Perform day-to-day operations independently with little assistance from other team members or laboratory directors
Participate in clinical validation of a new test or update to existing test with minimal supervision. Create validation documentation and SOP documentation drafts requiring minimal corrections
Preferred Knowledge, Skills and Abilities
Knowledge to independently design and complete clinical validations, as well as oversee development and drafting of validation and SOP documentation.
Excellent communication skills (oral and written), attention to detail, problem-solving ability
Clear understanding of CAP requirements
Licenses and Certifications
None
These principles apply to ALL employees:
SHC Commitment to Providing an Exceptional Patient & Family Experience
Stanford Health Care sets a high standard for delivering value and an exceptional experience for our patients and families. Candidates for employment and existing employees must adopt and execute C-I-CARE standards for all of patients, families and towards each other. C-I-CARE is the foundation of Stanford’s patient-experience and represents a framework for patient-centered interactions. Simply put, we do what it takes to enable and empower patients and families to focus on health, healing and recovery.
You will do this by executing against our three experience pillars, from the patient and family’s perspective:
Know Me: Anticipate my needs and status to deliver effective care
Show Me the Way: Guide and prompt my actions to arrive at better outcomes and better health
Coordinate for Me: Own the complexity of my care through coordination
Equal Opportunity Employer Stanford Health Care (SHC) strongly values diversity and is committed to equal opportunity and non-discrimination in all of its policies and practices, including the area of employment. Accordingly, SHC does not discriminate against any person on the basis of race, color, sex, sexual orientation or gender identity and/or expression, religion, age, national or ethnic origin, political beliefs, marital status, medical condition, genetic information, veteran status, or disability, or the perception of any of the above. People of all genders, members of all racial and ethnic groups, people with disabilities, and veterans are encouraged to apply. Qualified applicants with criminal convictions will be considered after an individualized assessment of the conviction and the job requirements.
Base Pay Scale: Generally starting at $68.52 - $90.78 per hour
The salary of the finalist selected for this role will be set based on a variety of factors, including but not limited to, internal equity, experience, education, specialty and training. This pay scale is not a promise of a particular wage.